PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00000780-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family HSF
Protein Properties Length: 480aa    MW: 53694.4 Da    PI: 4.6361
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00000780-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.62.3e-341352262102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Flkk++e++ed+++++++swse+ +sf v+de+ fa+++Lp+yFkh+nf+SF+RQLn+YgFkk+++++         w+F+++ F+ gkk+
  WALNUT_00000780-RA 135 FLKKIFEMVEDPDTDTVVSWSETRDSFTVWDEHVFAQDLLPRYFKHRNFSSFIRQLNTYGFKKIDTDN---------WKFANEGFQGGKKH 216
                         9*****************************************************************99.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++ikr+++
  WALNUT_00000780-RA 217 LLKSIKRRSR 226
                         *******985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.22E-32131224IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.7E-52131224IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.5E-36131224IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.4E-18135158IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.2E-30135224IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-18173185IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340174198IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-18186198IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MVTESDGGHT FSSLPMKEQV VDEEEEEETR TTPSDNNPSN SGGAPHGGSS STAIWTPVHD  60
INDTAPPTRT KVSEVGDIEV VHIKKEEEED EEEEEDRDVA NFDSDGGGNG PSSSSSLAAV  120
PKPMEGLHEP GPPPFLKKIF EMVEDPDTDT VVSWSETRDS FTVWDEHVFA QDLLPRYFKH  180
RNFSSFIRQL NTYGFKKIDT DNWKFANEGF QGGKKHLLKS IKRRSRLNKQ QQQQQQGAVG  240
VNPKKPGFEA ELESLREDQN VLKVEILNLR QEQQDSQNHL GAVKNRIRGA ECRLQQTLFF  300
LTKITKSPGF AQQLIQKTKQ QKRELDGGEF VKRRRLLASH GREKAIDNSH SINCRNHVQG  360
DLVTTLSLLS KILEEAVDID TTHPVQTPFP APIDDALCSL EDQNVNVMYR SSSSPNISSA  420
YDVMAENLPE DNLNIVDEEL DMNDDSKFYS ELEDLIVKQH DLGGFRGGLV EQAGCIGAIP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-2313322427129Heat shock factor protein 1
5d5v_B4e-2313322427129Heat shock factor protein 1
5d5v_D4e-2313322427129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217223LKSIKRR
2331335KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002309214.21e-131hypothetical protein POPTR_0006s15050g
TrEMBLB9HDY21e-131B9HDY2_POPTR; Uncharacterized protein
STRINGPOPTR_0006s15050.11e-131(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106762938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.18e-75heat shock transcription factor A2